rOpenSci | Blog

All posts (Page 35 of 58)

packagemetrics - Helping you choose a package since runconf17

Before everybody made their way to the unconf via LAX and Lyft, attendees discussed potential project ideas online. The packagemetrics package was our answer to two related issues. The first proposal centered on creating and formatting tables in a reproducible workflow. After many different package suggestions started pouring in, we were left with a classic R user conundrum: “Which package do I choose?” With over 10,000 packages on CRAN - and thousands more on GitHub and Bioconductor - a useR needs a way to navigate this wealth of options....

Hey! You there! You are welcome here

What’s that? You’ve heard of R? You use R? You develop in R? You know someone else who’s mentioned R? Oh, you’re breathing? Well, in that case, welcome! Come join the R community! We recently had a group discussion at rOpenSci’s #runconf17 in Los Angeles, CA about the R community. I initially opened the issue on GitHub. After this issue was well-received (check out the emoji-love below!), we realized people were keen to talk about this and decided to have an optional and informal discussion in person....

Tackling the Research Compendium at runconf17

Two years ago at #runconf15, there was a great discussion about best practices for organizing R-based analysis projects that yielded a nice guidance document describing research compendia. Compendia, as we described them, were minimal products of reproducible research, using parts of R package structure to organize the inputs, analyses, and outputs of research projects. Since then, we’ve seen more examples and models of research compendia emerge (the organization of such projects is something of an obsession for some of the community)....

New rOpenSci Packages for Text Processing in R

Textual data and natural language processing are still a niche domain within the R ecosytstem. The NLP task view gives an overview of existing work however a lot of basic infrastructure is still missing. At the rOpenSci text workshop in April we discussed many ideas for improving text processing in R which revealed several core areas that need improvement: Reading: better tools for extracing text and metadata from documents in various formats (doc, rtf, pdf, etc)....

Unconf projects 5: mwparser, Gargle, arresteddev

And finally, we end our series of unconf project summaries (day 1, day 2, day 3, day 4). mwparser Summary: Wikimarkup is the language used on Wikipedia and similar projects, and as such contains a lot of valuable data both for scientists studying collaborative systems and people studying things documented on or in Wikipedia. mwparser parses wikimarkup, allowing a user to filter down to specific types of tags such as links or templates, and then extract components of those tags....

Working together to push science forward

Happy rOpenSci users can be found at